Past CMS Seminars

Explore past seminars at the Centre for Molecular Simulation

2017


Systematic & accurate coarse-graining of soft matter and biological systems

Date : Tuesday, 16th May, 2017    Time:   11:45   -   13:00     Location :  BI # 211
Speaker : Prof. Aatto Laaksonen, Professor, Stockholm University, Sweden
 

Atomic-level characterization of protein-protein association

Date : Tuesday,  9th May, 2017    Time:  11:45  -  13:00   Location : BI # 211
Speaker  : Albert Pan, Senior Scientist, D.E. Shaw Research, New York

Some cell behaviors are attributable to protein physics

Date : Monday,  10th April, 2017     Time :   13:30   -  14:30      Location :  BI # 211 
Speaker :  Prof.  Ken A. Dill, Director,  Laufer Center for Physical & Quantitative Biology,  Stony Brook University

 

Structural Features of Tubulin on Biomimetic Mitochondrial Membranes Measured with Neutron Reflectometry

Date :  Tuesday,  28th March, 2017    Time :   11:45  -  13:00     Location : BI # 561 
Speaker : Prof. David P. Hoogerheide, Physicist, National Institute of Standards & Technology, Center for Neutron Research, Gaithersburg, MD 

Overview of the Classical Drude Oscillator Polarizable Force Field for Biomolecules (CMS/BCEM Seminar)

Date :  Tuesday,  7th March, 2017    Time :   11:45  -  13:00     Location : BI # 211
Speaker : Prof.  Alexander D. MacKerell, Grollman-Glick Professor of Pharmaceutical Sciences, Director, Computer-Aided Drug, Design Center, School of Pharmacy, University of Maryland, Baltimore 

From Electronic Wave Functions to Kohn-Sham Effective Potentials

Date : Tuesday,  21st February, 2017    Time :  11:45  -  13:00     Location : BI # 211
Speaker : Prof. Viktor N. Staroverov, Associate Professor, Department of Chemistry, The University of Western Ontario

2016


Model Comparison in Structural Biology

Date :  Tuesday, 14th June,  2016    Time :  11:45  -  13:00     Location : BI # 211
Speaker : Dr. Nathan Babcock, Postdoctoral Fellow, Simon Fraser University

Mathematics, Engineering, and Molecular Biology

Date :  Wednesday, 25th May, 2016    Time :  11:45  -  13:00     Location : BI # 587
Speaker : Prof. Bob Eisenberg, Department of Molecular Biophysics and Physiology, Rush University Medical Center, Chicago, USA

Structure and dynamics of biological macromolecules at cellular scales

Date : Friday, 29th April, 2016    Time :  11:45  -  13:00    Location : BI # 211
Speaker : Prof. Michael Feig, Professor, Biochemistry & Molecular Biology, Chemistry Adjunct Professor, Computer Science & Engineering, Michigan State University

Slipping and Sliding: First-Principles Simulations of Tribological Processes

Date: Tuesday, 12th April, 2016     Time :  11:45  -  13:00    Location:  BI # 211
Speaker : Prof. Nick Mosey, Department of Chemistry, Queen’s University, Kingston, ON. 

The direct binding and action of cAMP to HCN channels

Date: Monday, 11th April, 2016     Time : 11:00  -  12:00     Location: BI # 211
Speaker : Prof. Eric Accili, Associate Professor, Faculty of Medicine, The University of British Columbia

Evidence for Nanoscopic Lipid Domains in Model Membranes and a Bacterium

Date: Tuesday,  9th February, 2016     Time: 11:45 - 13:00     Location: BI # 211 
Speaker : Dr. John Katsaras, Senior Scientist Biological Systems, ORNL, Distinguished R&D Staff,  Joint Faculty, Professor of Physics, University of Tennessee 

All-atom molecular simulations of intrinsically disordered proteins:force fields, and experimental interpretation

Date : Tuesday, 19th January, 2016     Time : 11:45 -  13:00     Location: BI # 587 
Speaker : Dr. Robert Best, Investigator, Laboratory of Chemical Physics, National Diabetes and Digestive and Kidney Diseases National Institutes of Health 

2015


The architecture of local adaptation: Theoretical predictions and empirical patterns in lodgepole pine and interior spruce

Date:  Tuesday, 10th November, 2015     Time:  11:45  - 13:00     Location: BI # 211
Speaker : Prof. Samuel Yeaman, Assistant Professor, AIHS Chair Bioinfo/Computational, Biological Sciences, University of Calgary

SLC4A11, a Mysterious Membrane Protein Causing Corneal Blindness (CMS/BCEM Seminar)

Date : Thursday, 5th November, 2015      Time :  11:00 - 12 noon      Location:  BI # 211
Speaker:  Prof. Joe Casey, Director, Membrane Protein Disease Research Group,  Director, International Research Training Group in Membrane Biology, Department of Biochemistry 

Regulation of Sec-Facilitated Protein Translocation and Membrane Integration

Date : Tuesday, 13th October, 2015     Time : 11:45  -  13:00     Location: BI # 211 
Speaker: Prof. Thomas Miller, Professor of Chemistry, California Institute of Technology

Visualizing Molecular Binding, Aggregation and Assembly from Simulations

Tuesday,  22nd September, 2015    Time : 11:45 - 13:00    Location: BI # 211
Speaker : Dr. Tian Tang, Associate Professor, Department of Mechanical Engineering, University of Alberta, Edmonton

Making the Cut: Regulation of Rhomboid-Mediated Intramembrane Proteolysis (CMS/Biochemsitry Seminar)

Tuesday, 18th August, 2015     Time : 11:00 - 12:00    Location : BI # 561
Speaker : Dr. M. Joanne Lemieux, Department of Biochemistry, School of Molecular & Systems Medicine, Faculty of Medicine & Dentistry, University of Alberta, Edmonton

Multiscale Modeling towards Understanding of DNA-CNT Nanohybirds

Friday, 26th June, 2015    Time : 11:00 - 12:00    Location :  BI # 499
Speaker : Morteza Amirani, Department of Mechanical Engineering, University of Alberta, Edmonton

Molecular Simulations of Selective Ion Permeation in Biological Ion Channels

Monday 8th  June, 2015    Time : 11:00 - 12:00    Location : BI # 499
Speaker : Professor Robert Farley, Keck School of Medicine, University of Southern California

Computer simulations of a pH-triggered anticancer peptide in model membranes

Monday 11th May, 2015    Time : 11:00 - 12:00    Location : BI # 561 
Speaker : Dr. Drew Bennett, Banting Postdoctoral Scholar, Department of Chemistry, University of Waterloo

SPARK OF LIFE: Understanding Nature’s Ion Channel Design via Computation

Monday 13 th April, 2015    Time : 11:30 - 13:00     Location : BI # 587
Speaker :  Prof. Michael L. Klein, Dean and Laura H. Carnell, College of Science and Technology, Temple University, USA

Breaking the Curse of Dimension for the Electronic Schrödinger Equation

Tuesday 10 th  March, 2015   Time : 11:30 - 13:00   Location : BI # 211 
Speaker : Prof. Paul W. Ayers, Department of Chemistry & Chemical Biology, McMaster University,Canada

Computational Modeling of Catalytic Mechanisms of Radical Enzymes-B12-independent Glycerol Dehydratase and 4-Hydroxyphenylacetate Decarboxylase

Monday 23rd February, 2015  Time : 13:00 - 14:00  Location : BI # 211
Speaker: Dr. Mikolaj Feliks, Institut de Biologie Structurale, Grenoble, France

Molecular driving interactions defining lipid positions around aquaporin-0

Thursday 5th February, 2015  Time : 13:00 - 14:00  Location : BI # 211 
Speaker: Dr. Camilo Aponte-Santamaria, Molecular Biomechanics Group, Heidelberg Institute for Theoretical Studies (HITS), Germany 

Cross-amyloid interactions between A? oligomers

Wednesday 4th February, 2015  Time : 13:00 - 14:00  Location : BI # 211
Speaker: Yoav Atsmon-Raz, Ben-Gurion University of the Negev, Israel

Molecular Evolution in the Golden Age of Genetics

Tuesday 13th January, 2015  Time : 11:30 am - 13:00  Location : BI # 211
Speaker: Dr. Jason de Koning, Faculty of Medicine, University of Calgary